PhD student in epidemiology or bioinformatics

The PhD student will work in a team of four researchers funded by a prestigious VICI grant entitled ‘PRECISE. Precision medicine for age-related macular degeneration: from biomarkers to patient stratification and disease modeling’.

29 dagen geleden

Arbeidsvoorwaarden

Standplaats:
Landelijk / geen vaste standplaats
Dienstverband:
Tijdelijk contract / Tijdelijke opdracht
Uren per week:
36 uur
Opleidingsniveau:
WO

Functieomschrijving

This post is available for a fixed term of four years to undertake research in relation to age-related macular degeneration (AMD). The PhD student will work in a team of four researchers funded by a prestigious VICI grant entitled ‘PRECISE. Precision medicine for age-related macular degeneration: from biomarkers to patient stratification and disease modeling’ that was recently awarded to Prof. Anneke den Hollander by the Netherlands Organisation for Scientific Research (NWO). Specifically, the PhD student will develop precision medicine approaches for AMD by stratifying patients into subgroups based on genetic variants, serum biomarkers and imaging characteristics.

AMD is the most common cause of vision loss in the elderly, and has a huge psychological and social impact on quality of life. No curative treatment has yet been approved that prevents the degenerative process in AMD. Recent work has suggested that several molecular pathways contribute to AMD although it remains unclear to what extent and in what manner these pathways are integrated in the etiology of the disease. For example, our research identified a subgroup of AMD patients that has high activity of the complement system in serum. Such patients are expected to respond better to complement inhibitors that are currently in the clinical trial phase than patients in which other molecular pathways are affected and in which the complement system may play a lesser role. Other subgroups of patients may benefit from different treatments, targeting other molecular pathways. In the VICI project of Prof. Anneke den Hollander, genetic, serum and imaging biomarkers will be identified using innovative omics technologies and imaging software (carried out by a PhD student in molecular biology, other vacancy). AMD patients will then be stratified into subgroups based on these genetic, serum and imaging biomarkers (carried out by the PhD student in epidemiology or bioinformatics, this vacancy).

Finally, a new 3D organ-on-a-chip for these AMD subgroups will be developed to characterize the disease mechanisms and to test the effect of therapeutic compounds in these subgroups (carried out by a postdoc and a technician, other vacancies).

Tasks and responsibilities

  • The PhD student contributes to the development of new knowledge within the context of the VICI project ‘PRECISE. Precision medicine for age-related macular degeneration: from biomarkers to patient stratification and disease modeling’
  • Designs and performs scientific research
  • Writes scientific publications and presents findings at scientific meetings
  • Works in a team with PhD students, technicians, postdocs and senior scientists
  • Discusses, plans and performs research in a stimulating environment
  • Works in a highly international research group

Functie-eisen

  • Academic degree (MSc) in bioinformatics, statistics, epidemiology, physics or a related discipline
  • Experience in bioinformatic handling, data analysis and storage of large datasets (big data)
  • Preferably experience with exome sequencing, whole genome sequencing and/or omics data
  • Programming experience in Python/Perl, and in object-orientated programming (Java)
  • Ability to work with Linux operating systems
  • Affinity with fundamental research related to human disease
  • Enthusiasm and strong ambition to succeed in academic research
  • Highly motivated to work in an interdisciplinary environment at the cutting edge of science
  • Excellent interpersonal and communication skills are essential, as is a willingness to work flexibly
  • It is expected that the successful applicant will register for a PhD and will submit a high quality dissertation for examination within four years of his or her appointment

Conditions

Scale 10A: max € 40116 gross per year at full employment (incl. vacation bonus and end of year payments)

Additional information

Upon commencement of employment we require a certificate of conduct (Verklaring Omtrent het Gedrag, VOG). Radboud university medical center’s HR department will apply for this certificate on your behalf.

Applicants should send a letter of intent outlining special interest in the position, overall related qualifications, experience and career goals, a curriculum vitae, MSc transcript and grades, and names and addresses of professional references.

Information about the vacancy can be obtained from Prof. Dr. Anneke den Hollander, Anneke.denHollander@radboudumc.nl or Dr. Eiko de Jong Eiko.deJong@radboudumc.nl. (These e-mail addresses are to be used for information purposes only. Use the ‘Apply’ button to apply for the position.)

This vacancy is open until filled.

Bedrijfsomschrijving

The Radboudumc center advances human knowledge by conducting biomedical, translational and clinical research in order to improve wellbeing.

Our key strength is medical life-sciences and clinical practice, with an impressive infrastructure comprising state-of-the-art technology platforms and (translational) research facilities. The Radboudumc is therefore uniquely positioned in the emerging Euregio and Dutch healthcare infrastructure to play a leading role in the new healthcare paradigm of prediction, prevention and personalised medicine.

The Radboudumc focuses on scientific health challenges of today, with an eye on emerging diseases of the future.

Our mission: ‘to have a significant impact on healthcare’.

The research project will be based at the Departments of Ophthalmology and Human Genetics, and will be performed in close collaboration with Twente University for the organ-on-a-chip technology. The research group is embedded in the Donders Institute for Brain, Cognition and Behaviour of the Radboud University Medical Center. We provide a stimulating work environment within a group of enthusiastic clinical and non-clinical researchers with a strong national and international research network. The Departments of Ophthalmology and Human Genetics house a range of top researchers in the areas of ophthalmology, genetics, bioinformatics and stem cell research. Both departments have a strong track record, with recent publications in high-impact journals (Nature, Nature Genetics, Ophthalmology, JAMA Ophthalmology). The combined infrastructure is state-of-the-art including innovative genetic technologies (Next-Generation Sequencing, bioinformatics core), omics technologies for biomarker discovery (Radboudumc Technology Center for mass spectrometry), reprogramming and differentiation of induced pluripotent stem cells (Radboudumc Technology Center for stem cells) and a wide range of functional assays and model systems.

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